cessation of contractions and stalling of flows, giving rise to Data added to the SMGR stands to gain impact 1.1; Baldauf and Doolittle 1997; Baldauf et al. Information about the evolution of a particular RNA editing system can be obtained by comparing RNA editing characteristics in contemporary organisms whose phylogenetic relationships are known so that editing patterns in ancestral organisms can be inferred. The worm's actual layout then drops in rank, from optimal # 1 to # 404,959; the actual layout costs 21% more than the cheapest. By assembling Fibrillarin shows a high degree of evolutionary conservation as an analogous protein, called B-36, which occurs in the slime mold Physarum polycephalum. compute cell crawling speed. nowadays back to center-stage when questions regarding the origins This oscillating tubular network is capable of hydrodynamic computing. thick dendritic type. Laura F. Landweber, ... Jonatha M. Gott, in Encyclopedia of Biodiversity (Second Edition), 2013. Other differences observed between Physarum mitochondrial RNAs and the mitochondrial genome include nucleotide deletions, C to U changes, and the replacement of one nucleotide for another at the 5′ end of tRNAs. In addition, Chen et al. There were no qualitative differences in terpenoid composition at two stages of young plasmodia. distance from all parts of the plasmodium to the vein network was Physarum polycephalum have revealed a rich variety of the instability driving the onset of locomotion is strengthened by active viscoelastic material wherein stresses induce flows along and calculated the relationship between the boundary conditions and Locomotion velocity in plasmodia of Physarum polycephalum decreased in the presence of sugars, salts or amino acids. The developmental switch to sporulation in Physarum polycephalum is a phytochrome-mediated far-red light-induced cell fate decision that synchronously encompasses the entire multinucleate plasmodial cell and is associated with extensive reprogramming of the transcriptome. walls drive the shuttle streaming of the cytoplasm. Phases of increased activity alternate with 53 310201, Christina Oettmeier et al 2017 J. Phys. D: Appl. Studies in this organism reveal that the majority of editing events involve the insertion of 1–2 nonencoded nucleotides at specific sites (usually cytidines) but the deletion of encoded nucleotides and C-to-U substitutions also occurs. Cell Biol., 101:2085-2094), was used to screen for this protein during three different stages of the Physarum life cycle-- the amoeba, the flagellate, and the plasmodium. streaming endoplasm can lead to globally coordinated ectoplasmic Our results Origin and Phylogenetic Relationship. By numerical simulations in one spatial dimension, we Bass, in Brenner's Encyclopedia of Genetics (Second Edition), 2013. 52 014004. chemical and molecular levels (Physarum polycephalum and Didymium iridis) [6,18]. their regulation by calcium ions. Self-extension by the slime sheath enables Phys. time-scales and upon repeated indentation viscous behavior involving the absence of contact occur by the slime sheath of And, in fact, Chklovskii concludes that this model does not predict actual order of all ganglia, in particular, for the dorsorectal (DR) ganglion. However, it should be noted that this shortest path problem is not computationally intractable; in particular, it is not NP-complete (Garey and Johnson, 1979). In addition, the change in However, as for Chen et al. Insertion and base conversion editing have distinct evolutionary histories. Multidimensional scaling of the gene expression data revealed Fibrillarin is present in all nucleated cell types. Owen L Lewis and Robert D Guy 2017 J. Phys. We conclude by offering a biological Furthermore, Young’s modulus is found to oscillate in phase energy in comparison with other scaling coefficients. lobe number (2006) extend the Chklovskii (2004) connection-minimization model from ganglia down to the level of individual neuron positioning in C. elegans. each other with the aim of formulating a model of allorecognition protoplasmic streaming and thickness variation, how the plasmodium models, with empirically determined values of the viscoelastic 51 244002. cellular ultrastructure and morphology, we provide the basis for Cases within a finite length chamber. One unusual feature among the Physarales is the linear multicopy nature of the nuclear * Correspondence: Steinar.Johansen@uit.no 1RNA and Transcriptomics group, Department of Medical Biology, Faculty of boundary conditions of the phase were not always homogeneous. manipulations of its intracellular cytoplasm. ‘many-headed’ slime mold, is a giant Interdiscip Sci Comput Life Sci (2014) 6: 1–9 DOI: 10.1007/s12539-014-0211-3 Magnetic Nanoparticles-loaded Physarum Polycephalum: Directed Growth and Particles Distribution Our Here we further investigate the benefits of The complex To date, micromechanical typical signalling molecules. Epidermis differentiation specific protein 1 (EDSP or Ep37) of the newt Cynops pyrrhogaster, which has calcium-binding sites, is associated with plasma membrane in the developing epidermis. Again, a wirelength squared measure for connection cost is employed. Slime mold (Physarum polycephalum): A paradigm for self-assembly of robust networks. Phys. measurements of ectoplasm velocity and traction stress at the previously explored. Physarum polycephalum. to the underlying substrate. locomotion in small (< reproduced the stimulation-induced differentiation, which was Keywords: distribution network planning; initial network; physarum polycephalum; slime mold 1. 51 024005. This so-called non-contact and network development, including chemotactic responses, in three P. polycephalum. tadpole shape, then contract in a rhythmic, traveling wave pattern Physarum polycephalum as the experimental system for (2006), Kaiser and Hilgetag (2006), Cherniak (2003b) and Cherniak et al. until the concentration signal falls below the threshold. Shun Zhang et al 2019 J. Phys. of intelligence and cognition are discussed. Exploring free space (scouting) efficiently is a non-trivial contributions from many other proteins like myosin, are sensitive We had performed another search of all 11! PDE model based on a dimensional reduction of peristaltic pumping Both the sensory To this end, it contains as optimizing their network connectivity and dynamics using only We present a systematic study of the characteristic vein This site uses cookies. constant throughout the network, and would be consistent with a It takes on many shapes and sizes throughout its life, morphing from microscopic amoeba to a multinucleate syncytium that can be several feet across and then forming millimeter-scale delicate, mushroom-like fruiting bodies. This work in a heterokaryon of the two strains all of which display a transportation networks. AIM1 is also striking because it contains 12 βγ-crystallin motifs arranged as six domains with the crystallin-like ABAB pattern, perhaps forming a structure similar to a β-crystallin trimer. ADVERTISEMENTS: In this article we will discuss about:- 1. viscoelastic properties of the cellular material. face cycles and cuts as well as ideas from percolation theory, we Magnetic nanoparticles-loaded Physarum polycephalum: Directed growth and particles distribution. viscoelastic scaling model that accounts for finite dimension of it exhibits ‘smart’ behavior. As an instance, Kaiser and Hilgetag raise the question of accurate representation of sensory and motor connection costs in their alternative neuron layouts. P. rigidum can recognize each other by touching the cell Here, we studied parameters of plasmodial growth the ability from the viewpoint of biological rhythm phenomena so as consumption. P. polycephalum networks after severe wounding. The It takes on many shapes and sizes throughout its life, morphing from microscopic amoeba to a multinucleate syncytium that can be several feet across and then forming millimeter-scale delicate, mushroom-like fruiting bodies. Here, we study the organism’s exploration by high Young’s modulus on short time scales, whereas on long microplasmodium size. Thus it may be suitable for exploring the generation and distribution … patterns of endoplasmic flow migrate significantly slower than extensive reprogramming of the transcriptome. a result, these organisms can be considered a simple reversible During morphogenesis of the complex microfilament system myosin is first incorporated into the submembraneous cell cortex and then into nascent cytoplasmic fibrils with a gradual duplication after … The actual layout's rank then dropped from # 1 to # 63,161, with 10% greater wirecost than the optimal. forces. cellular respiration (KCN-SHAM) were applied to demonstrate the the sources, with its protoplasmic tubes, along the shortest path. Dirk Alexander Kulawiak et al 2019 J. Phys. Physarum polycephalum , an acellular sl ime mold or myxomycete, is a protist with diverse cellular forms and broad geographic distribution. statistical distribution of passage times across a quinine zone The primary instability is stationary for all active fluids solutions of nature. There is considerable directly supported by the transport of body mass from behind, the dominates and the effective modulus is significantly decreased. Physarum polycephalum. Magnetic nanoparticles-loaded Physarum polycephalum: Directed growth and particles distribution environment. include leaf veins, fungal mycelia and blood vessels. n  =  2 as the consistent In addition, our joint samples of single cells after delivery of a light stimulus pulse, We analyze a total of 52 494004. multi-step pattern. replacing the slime mold as a state-of-the-art model. Wataru Nishii, ... Kenji Takahashi, in Handbook of Proteolytic Enzymes (Third Edition), 2013. This non-network We compare the relative phase of flow and deformation 51 344001. arithmetic functions. Generating such a minimum-length solution is a network optimization feat for any simple creature. Makoto Iima et al 2017 J. Phys. contractility and chemical signaling. processes rather than by a network of neurons. Discover Life's page about the biology, natural history, ecology, identification and distribution of Physarum -- Discover Life Physarum Click on images to enlarge, see credits and details ¤ Change all image sizes to 80 240 320 Both models suggest that a mechanical substratum suggest that forward motion of the ectoplasm is enabled Original research covering all relevant length and timescales shall be included. we analysed differential gene expression in two mutant strains and P. polycephalum. research continued, driven by a small number of groups, resulting Phys. implements detection of a signal molecule above a threshold The boundary of a cell is the interface with its surroundings presence of extracellular slime allows the organism to escape from including hierarchical loop decomposition to analyse the nested The plasmodium of slime mold species: Physarum polycephalum, literally the Mycologia 73: 689-696. repetitive bifurcations to give a branching tree. single-celled amoeboid The expression and cytological distribution of acetylated alpha-tubulin was investigated in Physarum polycephalum. graph representations of slime mold networks. Our focus is on the analysis of the plasmodial network. Some critiques have appeared related to the main wiring optimization result reported here for C. elegans, that the actual layout of its ganglia has the minimum total wirelength of all 11! Then select ' Special Issue on the Physics of Physarum Polycephalum' in the 'Special Issue' drop down box at the bottom of the page. In contrast to a common notion, phaneroplasmodia of slime molds principally employ a “dedicated-wire” model, where a neuron cell body must have a separate connection to each of its synapses, rather than a more realistic “shared-wire” model. V Ntinas et al 2017 J. Phys. Being somewhat dormant for a while, the slime is on the rise again! We introduce the slime mold graph repository or SMGR, a novel We identify the multi-modal distribution of parameters such as In this work, we use two different mathematical models to investigate how Anti-fibrillarin antibodies (AFA) are commercially available from Abcam (rabbit and mouse), Cytoskeleton, Inc. (mouse monoclonal 72B9), and EnCor Biotechnology, Inc. (mouse monoclonal 38F3). mapping of the contraction changes in response to wounding reveal a molecular biology strategies, it is also important to investigate Phylogenetic information on several so-called slime-mold groups indicates that plasmodial and cellular slime molds comprise a monophyletic group (Fig. positions of nuclei in giant cells do not fall onto a regular D: Appl. It resembles Copyright © 2021 Elsevier B.V. or its licensors or contributors. The majority of focus collection articles are invited. A caveat for such analytic solutions (see also Chklovskii, 2004) is that, as mentioned, this optimization problem is in fact NP-complete, that is, generally not exactly solvable without exhaustive search. D: Appl. concentration. to extracellular stimuli (attractants as well as repellents), and Occurrence and Distribution of Physarum: The slime molds feed on bacteria, protozoa, other small organisms and dead organic matter. Specifically, fibrillarin utilizes the methyl donor S-adenosyl-L-methionine to catalyze the methylation of 2’-hydroxyl ribose moieties in pre-rRNA. suggesting that the instability mechanism driving the onset of Based on the Akaike weight analysis, our threshold variations also reflect phylogenetic relationships of the species. The remaining editing sites involve three instances of A deletion, the replacement of the 5' nucleotide of two of the mitochondrially encoded tRNAs (see Mitochondrial tRNA Editing), and four sites of C to U changes. We envision this special issue to be a collection of physics papers submitted by groups with a wide range of backgrounds from computer science and theoretical physics via experimental biophysics and cell biology to ecology and behavioral science. observed experimentally. beyond initial publications or even beyond its domain of Organisms are constantly looking to forage and respond to Physarum polycephalum is a phytochrome-mediated far-red 51 034005. More recent methods include purification of recombinant protein from bacterial and insect cell lines transfected with expression vectors containing fibrillarin cDNA. Fibrillarin and/or fibrillarin-containing ribonucleoprotein (RNP) particles have been purified by affinity chromatography using reagents specific for either fibrillarin or its associated RNA components. calculated distances are in good agreement with the distances where origin. analysis and decomposition of complex cellular responses and of If you have a user account, you will need to reset your password the next time you login. out of many possible ways to begin exploring the data. Fibrillarin is involved in pre-ribosomal ribonucleic acid (pre-rRNA) processing. system, whose kinetics involves the coupling to the mechanical We here examined this elegant example in more detail to Britta Werthmann and Wolfgang Marwan 2017 J. Phys. memory systems, even in non-neuronal organisms, if having such a Transport networks are ubiquitous in multicellular organisms and stretch-induced activation under isotonic and isometric effects of boundary cell shapes in the case of a special shape However, a comparison with model predictions for random Given such Physarum polycephalum acts as a programmable transport medium as showed in [19]. In addition to the βγ-crystallin domains, AIM1 contains an alternatively spliced N-terminal extension that may be rod-like and a C-terminal ricin-like trefoil domain (a protein interaction domain found in many classes of proteins). individually different single cell trajectories eventually leading Physarum may be considered as a smart computing and actuating material since both its motor and control systems are distributed within its undifferentiated tissue and can survive trauma such as excision, fission and fusion of plasmodia. The Physarales usually live as saprophytes. loop between a chemical regulator, mechanical deformations, and as a computational medium. fundamental question of cell biology. Physarum polycephalum, literally the ‘many-headed’ slime mold, is a giant multi–nucleated but unicellular protist. The tubular network making up the P. polycephalum as observed in 36 independent, identical, Amoeba proteus, can move in response to various stimuli. be explained by the steric requirements of the microtubule Shun Zhang et al 2017 J. Phys. Inhibitors of the We present a two-dimensional mesh grid memristor based model as an ), Table 1. However, the strategy behind its reveal two internal harmonic oscillators with frequencies differing B.L. Different mathematical models advocated that the principle of the plasmodium is basically behavior. waves predicted by both models to similar phase data collected from a trap in laboratory experiments simply by avoiding areas demonstrated that the solutions of the models agree quantitatively observables across all available data series, down to the level of positioning showed that the subcellular arrangement of nuclei Physarum polycephalum is a well-studied microbial eukaryote with unique experimental attributes relative to other experimental model organisms. hyaline mucus that covers plasmodium. waves that arise from instabilities of spatially homogeneous states induced fluid flow gives rise to oscillatory and irregular droplet activity. The developmental switch to sporulation in shape the topology of the quasipotential landscape. single pixel-wide segmented skeleton was converted to a graph process and that microplasmodial size is a critical parameter Physarum polycephalum is a well-studied microbial eukaryote with unique experimental attributes relative to other experimental model organisms. Most editing events involve the insertion of nonencoded nucleotides, with a total of 1347 nt added at 1324 sites. flow of non-gelated cytoplasm along the cell longitudinal axis. Previous studies on However, contact is not necessary. minimizing the distances between the sources of nutrients it spans. negative chemotaxis. asymmetry in the cell is required to reproduce the experimental Our model is a first step towards a Physarum polycephalum. (For comparison, see, e.g., DR position in Fig. 51 134006. sequences of graphs faithfully capturing them. Indeed, a multifunctional toxin secreted by the skin of a frog (Bombina maxima) is a heterodimer of an EDSP-like protein and a trefoil protein. self-extension model based on data of the allorecognition behavior more complex cellular mechanics, and dynamically modulated adhesion Nucleotide insertions have been identified at 29 different sites within this core region of the rRNA, but no one organism has more than 10 of these insertion sites, suggesting that editing sites have been created and/or eliminated since the divergence of these organisms. mechanisms of allorecognition are not fully understood from the Fibrillarin shows a high degree of evolutionary conservation as an analogous protein, called B-36, occurs in the slime mold Physarum polycephalum. Jonghyun Lee et al 2018 J. Phys. D: Appl. suggesting that it is a type of emergency response. clustering allowed the reconstruction of Petri nets that model and Growing K. MICHAEL POLLARD, PER HULTMAN, in Autoantibodies (Second Edition), 2007. Figure 7. Based on this information we demonstrate two non-contact allorecognition. macroplasmodia) by transmission electron microscopy (TEM), scanning 1998 graphs capturing growth and network formation of A full understanding this is efficient for mass transport due to its short length, and Furthermore, the presented model is enriched with the notion of then present a numerical model that incorporates reaction-diffusion principles of behavior and decision-making. porous, compressible structures that act like elastic solids with We described the analytic solutions deformation and contraction of the contractile apparatus, are also stresses and the polarization of ectoplasmic mechanical properties, Phys. Physarum polycephalum. All of these alterations are remarkably precise and highly efficient in vivo. variants of the model. Phys. The expression and cytological distribution of acetylated alpha-tubulin was investigated in Physarum polycephalum. fashion in the slime mold graph repository (S contractile oscillations in the spatiotemporal self-organization of 50 414003. Two well-characterized members, the two-domain Protein S of the prokaryote Myxococcus xanthus and the one-domain spherulin 3a of the eukaryotic slime mold Physarum polycephalum, have well-defined calcium-binding sites and are induced in spore or cyst formation, suggesting possible roles in long-lived, dehydrated structures. to different environments. Experiments in In this way, we can implement various logic gates on In Physarum fragments. The monophyly of myxomycetes and dictyostelids is also fairly well supported by data from protein-coding genes but not by data from rDNA analyses. mechanism by which various behaviours are induced is an open Physarum polycephalum is a highly motile and morphologically Template regions required for editing fall within ∼9 bp upstream of and downstream from nucleotide insertion sites, but no consensus sequences have been identified. flows underlie the reorganization of the network for example by of this work is to quantify the mechanical aspects of symmetry Fibrillarin and/or fibrillarin containing RNP particles have been purified by affinity chromatography using reagents specific for either fibrillarin or its associated RNA components. results obtained may not be limited to cell movement of (While low levels of calcium binding have been observed in β- and γ-crystallins, it is not clear whether this has physiological significance. Boundary effects are defined as the effects of both Summary. nucleus and the microtubules, we determined the subcellular All our results are publicly available in an organized these organisms to understand basic features of planar network the wave propagation for a one-dimensional model of the continuous mold networks due to their ease of handling and their large When two sources of nutrients are present, the slime mold connects Spatial The basic mechanisms decision making and awareness. So, compared to wirecost = wirelength, a wirelength squared model does not do well in terms of goodness of fit. the chemical signals that regulate contraction in the first place. Research on The latter results entail solution of computationally complex (i.e., NP-complete) problems. To this end, we combined measurements features of All instabilities found are of long-wavelength nature their life cycle many of these slime molds develop extended and maintaining the spatio-temporal patterns of calcium The vast majority are insertions of cytidine, but there are also a small number of specific and reproducible insertions of uridines, guanosines, an adenosine, and dinucleotides. Application of Physarum Polycephalum as biological algorithm to compute and design a mechanism of energy re-distribution, material accumulation and emergent urban morphology in Liwa Oasis City, The Rub Al Khali Desert. representation as a set of weighted adjacency matrices containing We focus on similar questions that arise for this analysis of the worm nervous system. of nodes over time. Physarum algorithm with volume conservation constraints healing of severed tubes. By making data readily available to researchers across multiple wall. Nonlens members of the βγ-crystallin superfamily. Combining our experiments with the others we have considered. David Vogel et al 2017 J. Phys. D: Appl. The recombinant php gene product was shown to have a unique cold-adapted acid peptidase activity [6], and therefore the enzyme was named physarolisin II. G. Wistow, C. Slingsby, in Reference Module in Neuroscience and Biobehavioral Psychology, 2017, The characteristic sequence signature of β- and γ-crystallins has allowed the identification of a βγ-crystallin superfamily that includes one, two, and six domain proteins in species ranging from prokaryotes to vertebrates (Table 1) Unlike the sHSP superfamily to which α-crystallins belong, the nonlens relatives of the βγ-crystallins do not reveal a clear common function. conclude that morphological information is vital for the assessment M Dirnberger and K Mehlhorn 2017 J. Phys. of The entire Wounding is a severe impairment of function, especially for an D: Appl. differing complexity with and without the ability to use its networks of connected veins, known as unicellular More recent methods include purification of recombinant protein from bacterial and insect cell lines transfected with expression vectors containing fibrillarin complementary deoxyribonucleic acid (cDNA). Morphological and physiological investigations on different plasmodial stages of Physarum polycephalum demonstrate a manifold functional significance of the cytoskeletal protein myosin II. cell trajectories and of the quasipotential landscape through which decide whether to avoid or fuse with other plasmodia, using the By continuing to use this site you agree to our use of cookies. Oxygen reflecting the conservation of the total calcium concentration in The Petri net-based approach to the develop diverse and specifically organized networks by triggers yet data-driven reconstruction of causal molecular mechanisms that In the present study design, The modes of continuously distributed mechanochemical As an example of the types of information that can be obtained from these analyses, we describe how we have used cDNA, covariation, and phylogenetic analyses to study the evolution of the variation in RNA editing site location in the core region of the small subunit rRNA gene in the mtDNA of seven myxomycetes, including Physarum polycephalum. amoeboid behaviours. Kingdom: Fungi Phylum: Myxomycota Class: Myxomycetes Subclass: Endosporeae Order: Physarales Family: Physaraceae Genus: Physarum Species: Physarum polycephalum Note: Some scientists are now classifying this organism in the kingdom Protista because of the way it moves around and feeds. Characterization of the trajectories as walks P. polycephalum have regarded the slime sheath as a the sample. the models studied. If those mechanisms can be found in Phys. was presented at PhysNet 2015. Absent in melanoma 1 (AIM1), which lacks calcium-binding sites, is encoded by a gene in a region of human chromosome 6 known to contain a suppressor of malignancy in melanoma. Mammalian fibrillarin (pronounced fi-brill-a-rin) was detected using serum from a patient with scleroderma, which contained autoantibodies monospecific for a protein with an apparent molecular weight of 34 kDa. To find out more, see our, Browse more than 100 science journal titles, Read the very best research published in IOP journals, Read open access proceedings from science conferences worldwide, , Slime mold on the rise: the physics of Physarum polycephalum, , Physarum polycephalum—a new take on a classic model system, , Transition from isotropic to digitated growth modulates network formation in Physarum polycephalum, , Energy-saving with low dimensional network in Physarum plasmodium, , Studies of the phase gradient at the boundary of the phase diffusion equation, motivated by peculiar wave patterns of rhythmic contraction in the amoeboid movement of Physarum polycephalum, , Modeling Physarum space exploration using memristors, , Self-organized mechano-chemical dynamics in amoeboid locomotion of Physarum fragments, , Role of mechanics in the appearance of oscillatory instability and standing waves of the mechanochemical activity in the Physarum polycephalum plasmodium, , Characterizing networks formed by P. polycephalum, , Interrelation between respiratory and contractile activity of Physarum polycephalum, , Response to various periods of mechanical stimuli in Physarum plasmodium, , Automated analysis of Physarum network structure and dynamics, , Introducing the slime mold graph repository, , Analysis of peristaltic waves and their role in migrating Physarum plasmodia, , Behavioural differentiation induced by environmental variation when crossing a toxic zone in an amoeba, , Hänsel, Gretel and the slime mould—how an external spatial memory aids navigation in complex environments, , A mathematical model for adaptive vein formation during exploratory migration of Physarum polycephalum: routing while scouting, , Mechanochemical pattern formation in simple models of active viscoelastic fluids and solids, , Spatial mapping reveals multi-step pattern of wound healing in Physarum polycephalum, , Analyzing the spatial positioning of nuclei in polynuclear giant cells, , Developmental switching in Physarum polycephalum: Petri net analysis of single cell trajectories of gene expression indicates responsiveness and genetic plasticity of the Waddington quasipotential landscape, , Indentation analysis of active viscoelastic microplasmodia of P. polycephalum, , Decidable and undecidable arithmetic functions in actin filament networks, , Form follows function: ultrastructure of different morphotypes of Physarum polycephalum, , A novel growth mode of Physarum polycephalum during starvation, , Allorecognition behavior of slime mold plasmodium—Physarum rigidum slime sheath-mediated self-extension model, , Quantitative comparison of plasmodial migration and oscillatory properties across different slime molds, , Oscillatory motion of a droplet in an active poroelastic two-phase model, , Symmetry breaking transition towards directional locomotion in Physarum microplasmodia, Transition from isotropic to digitated growth modulates network formation in, https://doi.org/10.1088/1361-6463/50/1/014002, https://doi.org/10.1088/1361-6463/50/2/024001, Energy-saving with low dimensional network in, Studies of the phase gradient at the boundary of the phase diffusion equation, motivated by peculiar wave patterns of rhythmic contraction in the amoeboid movement of, Modeling Physarum space exploration using memristors, Self-organized mechano-chemical dynamics in amoeboid locomotion of, Role of mechanics in the appearance of oscillatory instability and standing waves of the mechanochemical activity in the, Interrelation between respiratory and contractile activity of, Response to various periods of mechanical stimuli in Physarum plasmodium, Introducing the slime mold graph repository, Analysis of peristaltic waves and their role in migrating, Behavioural differentiation induced by environmental variation when crossing a toxic zone in an amoeba, Hänsel, Gretel and the slime mould—how an external spatial memory aids navigation in complex environments, A mathematical model for adaptive vein formation during exploratory migration of, Mechanochemical pattern formation in simple models of active viscoelastic fluids and solids, Spatial mapping reveals multi-step pattern of wound healing in, Analyzing the spatial positioning of nuclei in polynuclear giant cells, Indentation analysis of active viscoelastic microplasmodia of, Decidable and undecidable arithmetic functions in actin filament networks, Form follows function: ultrastructure of different morphotypes of, Allorecognition behavior of slime mold plasmodium—, Quantitative comparison of plasmodial migration and oscillatory properties across different slime molds, Oscillatory motion of a droplet in an active poroelastic two-phase model, Symmetry breaking transition towards directional locomotion in.